Publications
References and Links to Papers
2025
Zhilina D, Bolaños Castro LA, Eguiguren JS, Zocher S, Karasinsky A, Widmer D, Espinós A, Borrell V, Brand M, Miura K, Zierau O, Yun MH*, Toda T*. (2025) Dynamic expression of lamin B1 during adult neurogenesis in the vertebrate brain. Dev Dynamics
Brown T*, Mishra K*, Elewa A*, Iarovenko S*, Subramanian E, Joven Araus A, Petzold A, Fromm B, Friedländer MR, Rikk L, Suzuki M, Suzuki KT, Hayashi T, Toyoda A, Oliveira CR, Osipova E, Leigh ND*, Yun MH*, Simon A*. (2025) Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration. Cell Genomics
2024
Ogrodnik M, ... Yun MH, Grillari J, Demaria M. (2024) Guidelines for minimal information on cellular senescence experimentation in vivo. Cell
Kosch TA, Torres-Sánchez M, Liedtke HC, Summers K, Yun MH, ... ; Amphibian Genomics Consortium (AGC). (2024) The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation. bioRxiv
Tsissios G., Sallese A., Perez Estrada J.R., Tangeman J., Chen W., Smucker B., Ratvasky S., Grajales Esquivel E. , Martinez A., Visser K., Joven Araus A., Wang H., Simon A., Yun M.H., Del Rio-Tsonis K. (2024). Macrophages modulate fibrosis during newt lens regeneration. Stem Cell Research & Therapy
Mestres I, Atabay A, Escolano J.C., Arndt S., Schmidtke K., Einsiedel M., Patsonis M., Bolanos Castro L.A., Yun M., Bernhardt N., Taubenberger A., Calegari F. (2024) 'Manipulation of the Nuclear Envelope-Associated Protein SLAP During Mammalian Brain Development Affects Cortical Lamination and Exploratory Behavior'. Biology Open
Bhatia P, Bickle M, Agrawal AA, Truss B, Nikolaidi A, Brockmann K, Reinhardt L, Vogel S, Szegoe EM, Pal A, Hermann A, Mikicic I, Yun M, Falkenburger B, Sterneckert J. (2024) "Axonal Lysosomal Assays for Characterizing the Effects of LRRK2 G2019S" Biology
2023
Yu Q., Walters H., Pasquini G., Singh S.P., Lachnit M., Olivaira A.C., Perinan D.L., Petzold A., Kesavan P., Subiran C., Suner I.G., Knapp D., Wagner A., Bernardos A., Alfonso M., Nadar G., Graf A., Troyanovskiy K., Dahl A., Busskamp V., Manaez R., Yun M.H.*. (2023) 'Cellular senescence modulates progenitor cell expansion during axolotl limb regeneration'. Developmental Cell.
Cassie L. Kemmler, Jana Smolikova, Hannah R. Moran, Brandon J. Mannion, Dunja Knapp, Fabian Lim, Anna Czarkwiani, Viviana Hermosilla Aguayo, Vincent Rapp, Olivia E. Fitch, Seraina Bötschi, Licia Selleri, Emma Farley, Ingo Braasch, Maximina Yun, Axel Visel, Marco Osterwalder, Christian Mosimann, Zbynek Kozmik, Alexa Burger (2023). Conserved enhancers control notochord expression of vertebrate Brachyury. Nature communications.
Castillo Bautista, C.M.; Eismann, K.; Gentzel, M.; Pelucchi, S.; Mertens, J.; Walters, H.E.; Yun, M.H.; Sterneckert, J. Obatoclax Rescues FUS-ALS Phenotypes in iPSC-Derived Neurons by Inducing Autophagy. Cells 2023, 12, 2247.
Georgios Tsissios, Anthony Sallese, J.Raul Perez Estrada, Jared Tangeman, WeihaoChen, Byran Smucker, Sophia Ratvasky, Erika Grajales Esquivel, Arielle Martinez, Kimberly Visser, Alberto Joven Araus, Hui Wang, Andras Simon, Maximina Yun, KatiaDel Rio-Tsonis. 'Macrophages modulate fibrosis during newt lens regeneration'. bioRxiv 2023.
Walters, H. E., Troyanovskiy, K. E., Graf, A. M., & Yun, M. H. (2023). Senescent cells enhance newt limb regeneration by promoting muscle dedifferentiation. Aging Cell
2022
Brown T., Elewa A., Iarovenko S., Subramanian E., Joven A., Petzold A., Susuki M., Hayashi T., Suzuki K., Toyoda A., Oliveira A.C., Osipova E., Hiller M., Leigh N.*, Simon A.*, Yun M.H.*. ‘Sequencing and chromosome-scale assembly of the giant Pleurodeles waltl genome’. bioRxiv: 2022.10.19.512763 (2022).
Qinghao Yu, Phillip B. Gates, Samuel Rogers, Ivan Mikicic, Ahmed Elewa, Florian Salomon, Martina Lachnit, Antonio Caldarelli, Neftali Flores-Rodriguez, Anthony J Cesare, Andras Simon, Maximina H. Yun*. (2022) Telomerase-independent maintenance of telomere length in a vertebrate. bioRxiv.
Yu Q., Walters H.E., Yun M.H. ‘Induction and characterization of cellular senescence in salamanders’. Methods in molecular biology, 2562: 135-154 (2023).
Murawala P., Oliveira A.C., Okulski H., Yun M.H., Tanaka E.M. 'Baculovirus production and infection in the axolotl'. Methods in molecular biology, 2562: 369-387 (2023).
Jamie Woych, Alonso Ortega Gurrola, Astrid Deryckere, Eliza C. B. Jaeger, Elias Gumnit, Gianluca Merello, Jiacheng Gu, Alberto Joven Araus, Nicholas D. Leigh, Maximina Yun, András Simon, Maria Antonietta Tosches. (2022) Cell type profiling in salamanders identifies innovations in vertebrate forebrain evolution. Science.
Masselink W., Sandoval Guzman T., Yun M.H. (2022) Meeting report: Salamander Models in Cross-disciplinary Biological Research Meeting. Developmental dynamics.
Oliveira C.R., Knapp D., Elewa A, Gerber T., Gonzalez Malagon S., Gates P.B., Walters H.E., Petzhold A., Arce H., Cordoba R.C., Subramanian E., Chara O., Tanaka E. M., Simon A., Yun M.H.*. (2022) Tig1 regulates proximo-distal identity during salamander limb regeneration. Nature communications.
2021
Oliveira C.R., Knapp D., Elewa A, Gerber T., Gonzalez Malagon S., Gates P.B., Petzhold A., Arce H., Cordoba R.C., Subramanian E., Chara O., Tanaka E. M., Simon A., Yun M.H.*. (2021) Tig1 regulates proximo-distal identity during salamander limb regeneration. Biorxiv.
Yun M.H. (2021) Salamander insights into ageing and rejuvenation. Front. Cell Dev. Biol.
Yun M.H., Hayashi T., Simon A. (2021) Standardised gene and genetic nomenclature for the newt Pleurodeles waltl. Developmental Dynamics.
2020
Subiran Adrados C, Yu Q, Bolaños Castro LA, Rodriguez Cabrera LA, Yun MH (2020) Salamander-Eci: An optical clearing protocol for the three-dimensional exploration of regeneration. Developmental Dynamics. doi: 10.1002/dvdy.264
Bolaños Castro LA, Walters HE, Garcia Vazquez RO, Yun MH (2020) Immunity in Salamander Regeneration: Where are we standing and where are we headed? Developmental Dynamics. doi:10.1002/dvdy251
Walters HE & Yun MH (2020) Rising from the ashes: cellular senescence in regeneration. Current Opinion in Development and Genetics. 64:94-110
Yu Q. & Yun MH (2020) Interconnection Between Cellular Senescence, Regeneration and Ageing in Salamanders. Senolytics in Disease, Ageing and Longevity; Springer Nature; pp 43-62
2019
Prummel, Hess et al (2019) A conserved regulatory program initiates lateral plate mesoderm emergence across chordates. Nature Communications. 10:3857
2018
Czarkwiani A, Yun MH (2018) Out with the old, in with the new: senescence in development. Current Opinion in Cell Biology. 55:74-80.
Yun MH (2018) Cellular senescence in tissue repair: every cloud has a silver lining. Int. Journal of Developmental Biology. 62(6-7-8):591-604
2017
Davaapil H, Brockes JP, Yun MH (2017) Conserved and novel functions of cellular senescence during vertebrate development. Development. 144 (1): 106-114.
2015
Yun MH (2015) Changes in regenerative capacity through lifespan. International Journal of Molecular Sciences. 16(10): 25392-25432
Yun MH, Davaapil H, Brockes JP (2015) Recurrent turnover of senescent cells during regeneration of a complex structure. eLife. 4 (2015).
2014
Yun MH, Gates PB, Brockes JP(2014) Sustained ERK activation underlies reprogramming of regeneration-competent salamander cells and distinguishes them from their mammalian counterparts. Stem Cell Reports. 3(1): 15-23.
2013
Yun MH, Gates PB, Brockes JP (2013) Regulation of p53 is critical for vertebrate limb regeneration. PNAS. 110 (43):17392-7.